Learn to use the MINT resource, a collection of molecular interaction databases that can be used to search for, analyze and graphically display molecular interaction networks and pathways from a wide variety of species. MINT is comprised of separate database components. HomoMINT, is an inferred human protein interatction database. Domino, is database of domain peptide interactions. A new component has been added called VirusMINT that explores the interactions of viral proteins with human proteins. Learn to use this comprehensive collection of database, and it will be a valuable addition to your molecular interaction research toolbox.
You will learn:
This tutorial is a part of the tutorial group Interaction resources. You might find the other tutorials in the group interesting:
Pathway Interaction Database: A resource of pathway and network data and displays
Cytoscape: An open-source software platform used for visualization and analysis of molecular interaction and network data
BiologicalNetworks: Analyze and visualize molecular interaction networks
BioSystems: Database of Biological Systems
Reactome Legacy: Older version of the current Reactome knowledgebase of biological processes.
Reactome: Knowledgebase of biological processes
GeneMANIA: GeneMANIA: Fast Gene Function Predictions
GenMAPP: A freely available open source software application for visualizing microarray data in the context of biological pathways.
VisANT: A web-based or downloadable software platform used for visualization and analysis of networks and interaction pathways
InterPro: A comprehensive protein signature resource
IntAct protein interaction database: IntAct is an open source database and analysis resource for protein interaction data
KEGG: KEGG, The Kyoto Encyclopedia of Genes and Genomes
This tutorial is a part of the tutorial group Motifs and Domains. You might find the other tutorials in the group interesting:
Melina II: A Web-Based Tool for Promoter Analysis
Gibbs Motif Sampler: A motif finder and analysis tool
MEME Suite Sequence Annotation Tools: MEME suite motif finding and annotating tools
MDscan: Motif Discovery scan for nucleotide and protein motifs
PROSITE: Database of protein domains, families and functional sites
MEME Suite TOMTOM and GOMO algorithms: Motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences that you provide
MEME Suite GLAM2 Algorithm: Part of a motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences.
MEME Algorithm: Multiple Expectation Maximum for Motif Elicitation
MEME Suite Overview: Motif-based sequence analysis tools
SMART: Protein domain annotation and analysis of domain architectures
InterPro: A comprehensive protein signature resource
Proteins : Tools that are primarily used in the storage, retrieval, or exploration of amino acid based data. Some tools may also involve nucleotide sequence information.
Pathways and Interactions : Tools that are involved with protein interactions and pathway features. Some tools are primarily repositories and some offer analysis options.
Video Tip of the Week: Complex Portal with Super Curators: From the same team that brings us the IntAct database for protein interaction data, the Complex Portal offers insights for additional levels of protein interactions that are organized around a biologic...
Video Tip of the Week: InnateDB, Systems Biology of the Innate Immune Response: The immune system is challenging to study. Different people may mount different responses to assaults on their system--and sometimes the systems go into overdrive on stuff they shouldn't. Cracking the ...
What's the Answer? (host-pathogen pairs): BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to...
NAR database issue (always a treasure trove): The advance access release of most of the NAR database issue articles is out. As usual, this this database issue includes a wealth of new and updated data repositories and analysis tools. We'll be wri...
Tip of the week: VirusMINT: In this week's tip I'd like to introduce you to VirusMINT. We found VirusMINT during our 'regularly scheduled' update of our Introductory tutorial on MINT, or the Molecular INTeraction database. We re...
Recent BioMed Central research articles citing this resource
Parkes E. Joanna et al., Systematic protein-protein interaction and pathway analyses in the idiopathic inflammatory myopathies. Arthritis Research Therapy (2016) doi:10.1186/s13075-016-1061-7
Iyappan Anandhi et al., NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer"s disease. Journal of Biomedical Semantics (2016) doi:10.1186/s13326-016-0079-8
Yamagishi Hidetsugu et al., Molecular pathogenesis of sporadic colorectal cancers. Chinese Journal of Cancer (2016) doi:10.1186/s40880-015-0066-y
Muraro Daniele et al., An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease Networks analysis. BMC Bioinformatics (2016) doi:10.1186/s12859-016-0886-z
Yeh Shu-Hui et al., Differentiation of type 2 diabetes mellitus with different complications by proteomic analysis of plasma low abundance proteins. Journal of Diabetes Metabolic Disorders (2016) doi:10.1186/s40200-016-0246-6