IMG is a powerful community resource for the comparative analysis and annotation of microbial genome data.
Tutorial and training materials by OpenHelix
|The Integrated Microbial Genomes (IMG) comparative genomics system supports timely and comprehensive analysis of genomes across multiple domains of life. The tools available on IMG allow for the analysis of genomes, genes and functions, individually or comparatively from Archaea, bacteria, eukaryotes, viruses and plasmids. Here a researcher can explore organism information, genome statistics and viewers, phylogenetic distributions of genes and horizontally transferred genes. Functional information includes protein domain, orthology, enzyme and pathway information. Genome analyses include abundance profiles, function profiles, genome clustering and more. Analysis carts and MyIMG are additional powerful analysis tools available to aid your research.|
- to find a set of objects (genomes, genes, or functions)
- to analyze profiles of objects (either individually or comparatively)
- to compare genomes using abundance and function profiles and by clustering
- to use other important tools such as IMG analysis carts and MyIMG
- how to view genome project maps and metadata category information
This tutorial is a part of the tutorial group Genome Browsers. You might find the other tutorials in the group interesting:
This tutorial is a part of the tutorial group IMG resources. You might find the other tutorials in the group interesting:
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Recent BioMed Central research articles citing this resource
Fleischmann K Katrin et al., RNAi-mediated silencing of MLL-AF9 reveals leukemia-associated downstream targets and processes. Molecular Cancer (2014) doi:10.1186/1476-4598-13-27
Iwata Keiko et al., N -ethylmaleimide-sensitive factor interacts with the serotonin transporter and modulates its trafficking: implications for pathophysiology in autism. Molecular Autism (2014) doi:10.1186/2040-2392-5-33
Shi Bin et al., Comparative analysis of human and mouse immunoglobulin variable heavy regions from IMGT/LIGM-DB with IMGT/HighV-QUEST Bioinformatics. Theoretical Biology and Medical Modelling (2014) doi:10.1186/1742-4682-11-30
Zolfaghari Emameh Reza et al., Bioinformatic analysis of beta carbonic anhydrase sequences from protozoans and metazoans. Parasites Vectors (2014) doi:10.1186/1756-3305-7-38
Tang Haibao et al., An improved genome release (version Mt4.0) for the model legume Medicago truncatula Plant genomics. BMC Genomics (2014) doi:10.1186/1471-2164-15-312
More about the resource:
The Integrated Microbial Genomes (IMG) resource comparative genomics system is a data management platform for analyzing microbial genomes. sequenced by the Joint Genome Institute (JGI) of the US Department of Energy. IMG also integrates data from many other public information resources, such as the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics, the National Center for Biotechnology Information (NCBI), Pfam, and the Kyoto Encyclopedia of Genes and Genomes (KEGG).
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